PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000005.1_g00049.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 252aa    MW: 27559.9 Da    PI: 5.6025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000005.1_g00049.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00094106128123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++C+ C++ F ++  L  H++ H
  Itr_sc000005.1_g00049.1 106 FTCNFCKRKFYSSQALGGHQNAH 128
                              89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-6103133No hitNo description
PROSITE profilePS5015711.219106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MMKGSDFDLE VEASSENDYD IISQVGSNVS IQETLTEASK MSGLMELQLS SEPVSLDLSL  60
GFKPGPGCFD EMAGGQGSAA FSVSSTSESS NELTTQTTGS ANPRVFTCNF CKRKFYSSQA  120
LGGHQNAHKR ERTLAKRAMR MAIFSEKYAS FASLPLHSYT AAAAAARSLE IKTHSSLHGF  180
APTMRPLDFR TYSKFEPALL SQPIYVEDDE PKMLWPGSFR PEAASHPTTM NHVEMAQFQD  240
SDKSAPDLTL RL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032204.11e-78Zinc finger protein 4
SwissprotQ392634e-38ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A061EDS81e-78A0A061EDS8_THECC; Zinc finger protein 4
STRINGGLYMA14G39280.12e-73(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12832347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.16e-38zinc finger protein 4